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272232

Whole Genome Sequencing of Date Palm (Phoenix dactylifera L.) Cultivars Using NGS.

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Last updated: 03 Jan 2025

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Abstract

Date palm (Phoenix dactylifera L.) is related to the family Arecaceae, which is considered one of the most ancient economically cultivated crops. Mainly, it is grown in the arid regions of the Middle East and North Africa.  The crucial matter in maintaining the diverse number of date palm cultivars in Egypt is its biodiversity conservation of it. In order to progress programs and cultivar characterization and conservation to combat genetic erosion, we must estimate the genetic variability and right date palm cultivar identification this is the important point to present a comprehensive investigation for Egyptian date palm genome variations and develop novel DNA markers (SNPs and indels) in four date palm cultivars using SOLiD sequencing.

DOI

10.21608/eajbsc.2022.272232

Keywords

Whole Genome (WGS) Sequencing -Next Generation Sequencing (NGS), SNP, Indel, DNA Markrs, date palm

Authors

First Name

Sara

Last Name

Aly

MiddleName

-

Affiliation

Department of Botany, Faculty of Science, Ain Shams University, Cairo, Egypt.

Email

-

City

Egypt

Orcid

-

First Name

Mohamed

Last Name

Saad

MiddleName

E.

Affiliation

Department of Nucleic acid, proteomics and Genomics, Genomics facility central lab, Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center ARC, Egypt. - Department of Biology, Faculty of Science, Taibah University, Almadinah Almonawarah, Kingdom of Saudi Arabia.

Email

-

City

Egypt

Orcid

-

First Name

Ashraf

Last Name

Hendam

MiddleName

-

Affiliation

Bioinformatics Unit, Central Lab for Agricultural Experts Systems, Agricultural Research Center (ARC), Giza, Egypt.

Email

-

City

Egypt

Orcid

-

First Name

Amina

Last Name

Abdel-Hamied

MiddleName

-

Affiliation

Department of Nucleic acid, proteomics and Genomics, Genomics facility central lab, Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center ARC, Egypt.

Email

-

City

Egypt

Orcid

-

First Name

Ahmed

Last Name

Al-Sadek

MiddleName

Farouk

Affiliation

Bioinformatics Unit, Central Lab for Agricultural Experts Systems, Agricultural Research Center (ARC), Giza, Egypt.

Email

-

City

-

Orcid

-

First Name

E.

Last Name

Madboly

MiddleName

A.

Affiliation

The Central Laboratory for Date Palm Research and Development (CLDPRD), Agricultural Research Center (ARC), Giza, Egypt.

Email

-

City

Egypt

Orcid

-

First Name

Hoda

Last Name

Barakat

MiddleName

S.

Affiliation

Department of Botany, Faculty of Science, Ain Shams University, Cairo, Egypt.

Email

-

City

Egypt

Orcid

-

First Name

H.

Last Name

El-Atroush

MiddleName

-

Affiliation

Department of Botany, Faculty of Science, Ain Shams University, Cairo, Egypt.

Email

hala.elatroush1st@gmail.com

City

Egypt

Orcid

-

Volume

14

Article Issue

2

Related Issue

35452

Issue Date

2022-12-01

Receive Date

2022-10-01

Publish Date

2022-11-21

Page Start

311

Page End

330

Print ISSN

2090-0767

Online ISSN

2090-083X

Article File

EAJBSC_Volume 14_Issue 2_Pages 311-330.pdf

PDF . 1.3MB

Link

https://eajbsc.journals.ekb.eg/article_272232.html

Detail API

https://eajbsc.journals.ekb.eg/service?article_code=272232

Order

272,232

Type

Original Article

Type Code

673

Publication Type

Journal

Publication Title

Egyptian Academic Journal of Biological Sciences. C, Physiology and Molecular Biology

Publication Link

https://eajbsc.journals.ekb.eg/

MainTitle

Whole Genome Sequencing of Date Palm (Phoenix dactylifera L.) Cultivars Using NGS.

Details

Type

Article

Created At

22 Jan 2023