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260474

Effect of 5-Azacytidine as A Demethylation Agent on PCNA and RB1 Genes in Hepatocellular Carcinoma Cell Model “HepG2”

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Last updated: 03 Jan 2025

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Abstract

Epigenetic alterations are associated with human cancer development and the inactivation of tumor suppressor genes. Two such tumor suppressor genes, PCNA and RB1, showed an aberrant gene expression in HCC. DNA methylation alters the expression of genes and is one of the processes that transform normal cells into cancer cells. PCNA and RB1 genes screened methylation in the promoter regions in HepG2 cells. The current study examined the effect of DNA methyltransferase inhibitor (5-Azacytidine) on gene expression of PCNA and RB1 genes after treatment and showed the impact of 5-aza-CR on the Methylation degree of HepG2 cells. HepG2 cell line originated from hepatocellular carcinoma (HCC). Since HepG2 exhibits the characteristics of human liver carcinoma, it was a good model for detecting the changes in methylation patterns and the gene expression level that was detectable in a clinical setting. The human HepG2 cell line was treated with 5, 10, and 25 µM of 5-aza-CR for 24 h, 48 h, and 72 h. Methylation of PCNA and RB1 was detected by methylation-specific polymerase chain reaction (MSP). PCNA and RB1 gene expression detected by reverse transcription-polymerase chain reaction. The influence of 5-aza-CR on Cell viability was assessed by SRB assay for 24 h, 48 h, and 72 h. The IC50 is 20.52 µM for 24 h, 12.6117 µM for 48 h, and 10.63 µM for 72 h after exposure to 5-aza-CR, which showed that 5-aza-CR inhibited the growth of HepG2 cells in a time, and dose-dependent manner. Although other genes may be demethylated due to the 5-aza-CR treatment, we concentrated on the PCNA and RB1 genes. In HepG2 cells, PCNA and RB1 gene methylation were found before 5-aza-CR treatment. In contrast, no PCNA or RB1 gene expression was detected. Treatment with different concentrations of 5-aza-CR significantly decreased the methylation degree of the PCNA and RB1. 5-aza-CR at 25 µM for 72h showed the highest induction activity of PCNA and RB1 gene expression. Methylation-specific PCR results showed that 5-aza-CR promoted the expression of PCNA and RB1 by demethylation. Our results illustrate that 5-aza-CR could reverse the abnormal methylation degree of the PCNA and RB1 genes that are hypermethylated in HepG2 cells and induces the expression of the PCNA and RB1 genes by demethylation.

DOI

10.21608/eajbsc.2022.260474

Keywords

5-azacytidine, Hepatocellular carcinoma, PCNA gene, RB1 gene, HepG2 cells, DNA methylation, Gene expression, Real-time PCR, Methylation-specific PCR

Authors

First Name

Muhamed

Last Name

El Nobey

MiddleName

A.

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

mmuhammedelnobey@stu.kau.edu.sa

City

-

Orcid

-

First Name

Salim

Last Name

El Hamidy

MiddleName

M.

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia. -Princess Doctor NajlaBint Saud Al Saud Distinguished Research Center for Biotechnology, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

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City

-

Orcid

-

First Name

Ihsan

Last Name

Ullah

MiddleName

-

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

-

City

-

Orcid

-

First Name

Abdulkader

Last Name

Omar

MiddleName

S.

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia. -Princess Doctor NajlaBint Saud Al Saud Distinguished Research Center for Biotechnology, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

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City

-

Orcid

-

First Name

Naser

Last Name

Alkenani

MiddleName

A.

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

Email

-

City

-

Orcid

-

First Name

Ali

Last Name

Zari

MiddleName

-

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

-

City

-

Orcid

-

First Name

Ashwaq

Last Name

Batawi

MiddleName

H.

Affiliation

Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.

Email

-

City

-

Orcid

-

First Name

Rady

Last Name

El-Araby

MiddleName

E.

Affiliation

Division of Oral Biology, Dept., of Periodontology, Tufts University, School of Medicine, Boston. MA. USA; -Central Lab, Theodor Bilharz Research Institute (TBRI) Ministry of Scientific Research, Egypt

Email

rady.el_araby@tufts.edu

City

-

Orcid

-

Volume

14

Article Issue

2

Related Issue

35452

Issue Date

2022-12-01

Receive Date

2022-07-22

Publish Date

2022-09-21

Page Start

73

Page End

83

Print ISSN

2090-0767

Online ISSN

2090-083X

Link

https://eajbsc.journals.ekb.eg/article_260474.html

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https://eajbsc.journals.ekb.eg/service?article_code=260474

Order

9

Type

Original Article

Type Code

673

Publication Type

Journal

Publication Title

Egyptian Academic Journal of Biological Sciences. C, Physiology and Molecular Biology

Publication Link

https://eajbsc.journals.ekb.eg/

MainTitle

Effect of 5-Azacytidine as A Demethylation Agent on PCNA and RB1 Genes in Hepatocellular Carcinoma Cell Model “HepG2”

Details

Type

Article

Created At

22 Jan 2023