418485

Identification and In-Silico Characterization of Selected Osmoregulatory and Stress-Tolerance Genes of the Hilsa Shad (Tenualosa ilisha)

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Last updated: 29 Mar 2025

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Abstract

Osmoregulatory and stress-signaling genes are critical for fish survival and adaptation in dynamic aquatic environments. The Hilsa shad (Tenualosa ilisha), a migratory species of high economic and ecological importance, requires a thorough understanding of the molecular mechanisms underlying osmoregulation and stress signaling for effective management and sustainable production. In this study, we identified and characterized these genes using the draft genome of Hilsa. The identification process was based on the presence of corresponding functional domains, and gene characteristics such as coding sequence and protein length were calculated. Additionally, parameters like molecular weight (MW), isoelectric point (Ip), gene localization, gene structure, conserved motifs, and secondary/tertiary structures were analyzed, along with Gene Ontology (GO) analysis. The predicted genes were validated through PCR (Polymerase Chain Reaction) using gene-specific primers and sequencing. Sequence data confirmed the predicted genes, and blast analysis revealed high similarity with homologous genes from other fish species in the databases. Compared to other fish species, MW, Ip, gene structure, and conserved motifs exhibited notable diversity. Most of the identified genes were localized and expressed in the plasma membrane, nucleus, and cytoplasm. Secondary and 3D structural analyses showed a predominance of alpha helices with high-quality structure. GO analysis indicated that the majority of the genes are involved in ion transport, while others play roles in signal transduction, protein folding, and osteoclast differentiation. These findings provide valuable insights into the molecular functions of osmoregulatory and stress-signaling genes in Hilsa, which will contribute to a deeper understanding of their roles in osmoregulation

DOI

10.21608/ejabf.2025.418485

Keywords

Tenualosa ilisha, Gene, osmoregulation, Stress-tolerance, Characterization, Bangladesh

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Pervin

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et al.

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Volume

29

Article Issue

2

Related Issue

54176

Issue Date

2025-03-01

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2025-03-21

Publish Date

2025-03-01

Page Start

1,101

Page End

1,118

Print ISSN

1110-6131

Online ISSN

2536-9814

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https://ejabf.journals.ekb.eg/article_418485.html

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http://journals.ekb.eg?_action=service&article_code=418485

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69

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Publication Title

Egyptian Journal of Aquatic Biology and Fisheries

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https://ejabf.journals.ekb.eg/

MainTitle

Identification and In-Silico Characterization of Selected Osmoregulatory and Stress-Tolerance Genes of the Hilsa Shad (Tenualosa ilisha)

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Article

Created At

29 Mar 2025