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Optimization of anti-MRSA compound production by Streptomyces sp. AR05 using an integrated RSM-ANN-GA approach

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Last updated: 05 Jan 2025

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Abstract

The emergence of multidrug-resistant pathogens, such as methicillin-resistant Staphylococcus aureus (MRSA), poses a significant threat to the global public health. Streptomyces species have been recognized as a prolific source of bioactive secondary metabolites, including antimicrobial compounds. In this study, we aimed to optimize the production of anti-MRSA compounds by Streptomyces sp. AR05; a strain isolated from hydrocarbon-contaminated soil, using an integrated approach combining response surface methodology (RSM), artificial neural networks (ANN), and genetic algorithms (GA). The strain was identified through 16S rRNA gene sequencing and exhibited significant genetic similarity to Streptomyces kurssanovii and Streptomyces ostreogriseus. Using the Plackett-Burman design, the most important variables affecting the anti-MRSA activity were found to be peptone, CaCO3, and pH. These factors were optimized using Box-Behnken design, while RSM and ANN were utilized for modeling the experimental data. The predicted accuracy of ANN model was higher than that of the RSM model, with lower values of mean absolute percentage error (MAPE) and root mean square error (RMSE). Sensitivity analysis of the ANN model identified peptone as the most influential factor, followed by pH and CaCO3. The ANN model was further optimized using GA, and the optimized conditions (5.34 g/ l peptone, 1.54 g/ l CaCO3, pH 6.07) were experimentally validated, resulting in a 48.87 % increase in anti-MRSA activity compared to the initial conditions. The developed RSM-ANN-GA approach demonstrated the potential for enhancing the production of valuable antibacterial compounds from Streptomyces species and contributed to the global efforts to combat antimicrobial resistance. 

DOI

10.21608/nrmj.2024.314901.1695

Keywords

Streptomyces sp. AR05, Anti-MRSA compounds, Response surface methodology, artificial neural network, Genetic Algorithm, Optimization

Authors

First Name

Fateh

Last Name

Merouane

MiddleName

-

Affiliation

Biotechnology Laboratory, Higher National School of Biotechnology Taoufik KHAZNADAR, Constantine-3 University, Ali Mendjeli, 25100 Constantine, Algeria

Email

f.merouan@ensbiotech.edu.dz

City

-

Orcid

0000-0001-5194-3664

First Name

Amani

Last Name

Kifadji

MiddleName

-

Affiliation

Laboratory of Plant Biology and Environment, Faculty of Sciences, Badji Mokhtar University. 23000 Annaba, Algeria

Email

amanikifadji1@gmail.com

City

-

Orcid

0009-0005-2234-9769

First Name

Racha

Last Name

Mansouri

MiddleName

-

Affiliation

Faculty of Medicine, Paris-Saclay University, 91190 Paris, France

Email

rachamnsr@gmail.com

City

-

Orcid

0009-0000-4847-780X

First Name

Meroua

Last Name

Safa Mechouche

MiddleName

-

Affiliation

University Lille, CNRS, University Polytechnique Hauts-de-France, UMR 8520, IEMN, F-59000, Lille, France

Email

-

City

-

Orcid

0009-0005-7654-1502

First Name

Chemes

Last Name

El-Houda Messaad

MiddleName

-

Affiliation

Laboratory of Biodiversity and Biotechnological Technics for the Valuation of Plant Resources (BTB-VRV), Faculty of Sciences, SNV Department, Mohamed Boudiaf University, 28000 M’sila, Algeria

Email

-

City

-

Orcid

0009-0007-6692-6366

First Name

Anfal

Last Name

Bellebcir

MiddleName

-

Affiliation

Biotechnology Laboratory, Higher National School of Biotechnology Taoufik KHAZNADAR, Constantine-3 University, Ali Mendjeli, 25100 Constantine, Algeria

Email

anfel.bel96@gmail.com

City

-

Orcid

0009-0001-6842-3849

Volume

8

Article Issue

5

Related Issue

50276

Issue Date

2024-09-01

Receive Date

2024-08-04

Publish Date

2024-09-09

Page Start

2,555

Page End

2,579

Print ISSN

2537-0286

Online ISSN

2537-0294

Link

https://nrmj.journals.ekb.eg/article_378857.html

Detail API

https://nrmj.journals.ekb.eg/service?article_code=378857

Order

378,857

Type

Original Article

Type Code

2,265

Publication Type

Journal

Publication Title

Novel Research in Microbiology Journal

Publication Link

https://nrmj.journals.ekb.eg/

MainTitle

Optimization of anti-MRSA compound production by Streptomyces sp. AR05 using an integrated RSM-ANN-GA approach

Details

Type

Article

Created At

28 Dec 2024