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326922

Basic concepts in digitizing slides: An overview

Article

Last updated: 05 Jan 2025

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Tags

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Abstract

Background
Digital pathology involves the conversion of physical slides into digital formats for advanced analysis. Digitization begins with placing the physical slide on a scanner for imaging. Various file formats like MRXS, NDPI, iSyntax, DICOM, and SVS are used to store high-resolution images of whole slides.
Objective
This overview highlights the importance of each stage in digitizing slides for generating accurate and reliable results.
Method
This overview compares famous software viewers; namely, 3DHistech's PANNORAMIC and Roche's navify®, Clinical Viewer and InstantViewer.
Results
Digitizing and analyzing physical slides in digital pathology is a multi-step process involving sample preparation, scanning, image processing, and analysis. Advances in digital pathology software, cloud storage, and image analysis algorithms are enhancing the field's capabilities, although challenges in image quality and integration persist.
Advances in knowledge
While digital pathology offers significant advantages in terms of advanced analysis, data accessibility, and automation, it also presents challenges related to image quality, storage, integration, and the expertise required to utilize specialized tools.

DOI

10.21608/aced.2023.244791.1023

Keywords

Slide Digitization, Image analysis, Sample Preparation, Image Segmentation

Authors

First Name

Omnia

Last Name

Samir

MiddleName

-

Affiliation

Mansoura University

Email

omniasamir@mans.edu.eg

City

-

Orcid

-

First Name

Ebtissam

Last Name

Alerraqi

MiddleName

-

Affiliation

University of Szeged, Hungary

Email

ebtissam.erraqi@gmail.com

City

Debrecen

Orcid

-

Volume

4

Article Issue

2

Related Issue

43105

Issue Date

2023-08-01

Receive Date

2023-10-09

Publish Date

2023-08-01

Page Start

36

Page End

47

Print ISSN

2735-4288

Online ISSN

2735-4296

Link

https://aced.journals.ekb.eg/article_326922.html

Detail API

https://aced.journals.ekb.eg/service?article_code=326922

Order

326,922

Type

Type B: Systematic review and meta-analysis (with high level of evidence).

Type Code

1,745

Publication Type

Journal

Publication Title

Advances in Clinical and Experimental Dentistry

Publication Link

https://aced.journals.ekb.eg/

MainTitle

Basic concepts in digitizing slides: An overview

Details

Type

Article

Created At

28 Dec 2024