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Phenotypic and genotypic characterization of carbapenemases in carbapenem-resistant gram-negative bacilli isolated from adult cancer patients.

Article

Last updated: 25 Dec 2024

Subjects

-

Tags

Antimicrobial resistance

Abstract

Background: Carbapenem-resistant Gram-negative bacteria (CR-GNB) infections are prevalent in cancer patients with weakened immune systems, causing significant morbidity and mortality. The empirical use of antimicrobials has reduced mortality but led to the emergence of multidrug-resistant (MDR) bacteria. In this study, identification and susceptibility testing were carried out using standard procedures (Kirby-Bauer and broth microdilution techniques), and phenotypic and genotypic detection of carbapenemase-producing GNB isolated from adult cancer patients was performed using conventional procedures. Methods: One hundred and eight Gram-negative bacteria were recovered from various specimens, with the most common isolates being, Escherichia (E.) coli (45; 41.7%), followed by Klebsiella spp. (38; 35.2%), Acromobacter spp. (9;8.3%), Acinetobacter (A.) baumannii (5; 4.6%) and others including Enterobacter aerogenes, Raoultella ornithinolytica, Serratia fonticola, Citrobacter brakii, Comamonas testosteroni, Proteus mirabilis (11; 10.2%). Concerningly, 64 of 108 Gram-negative bacterial isolates (59.3%) were MDR. Furthermore, 91 out of 108 GNB isolates (84.3%) revealed a pattern of meropenem resistance using the broth microdilution method, which is a worrying rise in the rate of carbapenem resistance. Following the modified carbapenem inactivation method (mCIM), EDTA carbapenem inactivation method (eCIM), and combined disc test as phenotypic tests for the preliminary screening of carbapenemase producers (CPs), conventional PCR was performed on the 91 extracted DNA (Using 6 common carbapenemase primers). Results: It was found that blaNDM was the most common 60(66%), then blaOXA-48, VIM 47 (51.6%), blaIMP 32(35.2%), blaKPC 20(22.2%), and blaGES 12(13.2%). Conclusion: Based on these results, rapid and precise carbapenemase detection is crucial for clinical care, epidemiological investigations, and infection control.

DOI

10.21608/mid.2023.219321.1556

Keywords

Multidrug-resistant, Carbapenem resistance, NDM, OXA-48, Cancer patients

Authors

First Name

Dalia

Last Name

El.Nobi

MiddleName

-

Affiliation

Microbiology and Immunology, Faculty of Pharmacy, Assuit University, Assuit, Egypt

Email

daliaelnobi75@yahoo.com

City

Assuit

Orcid

-

First Name

Sherein

Last Name

Elgendy

MiddleName

G.

Affiliation

Department of Medical Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut, Egypt

Email

shereinelgendy@yahoo.com

City

-

Orcid

-

First Name

Rania

Last Name

Bakry

MiddleName

-

Affiliation

Department of Clinical Pathology, South Egypt Cancer Institute, Assiut University, Assiut, Egypt

Email

rania.bakry@mailcity.com

City

-

Orcid

-

First Name

Abeer

Last Name

Hassan

MiddleName

S.

Affiliation

Department of Pharmaceutics, Faculty of Pharmacy, South Valley University, Egypt

Email

abeers.hassan80@gmail.com

City

-

Orcid

-

First Name

Ehsan

Last Name

El-Sabaa

MiddleName

M. W.

Affiliation

Department of Microbiology and Immunology, Faculty of Pharmacy, Assiut University, Assiut, Egypt

Email

zihas_pioneer09@yahoo.com

City

-

Orcid

-

Volume

4

Article Issue

3

Related Issue

42578

Issue Date

2023-08-01

Receive Date

2023-07-01

Publish Date

2023-08-01

Page Start

853

Page End

870

Print ISSN

2682-4132

Online ISSN

2682-4140

Link

https://mid.journals.ekb.eg/article_307080.html

Detail API

https://mid.journals.ekb.eg/service?article_code=307080

Order

19

Type

Original Article

Type Code

1,157

Publication Type

Journal

Publication Title

Microbes and Infectious Diseases

Publication Link

https://mid.journals.ekb.eg/

MainTitle

Phenotypic and genotypic characterization of carbapenemases in carbapenem-resistant gram-negative bacilli isolated from adult cancer patients.

Details

Type

Article

Created At

25 Dec 2024