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274759

Diagnostic role of FilmArray Pneumonia Panel compared to routine microbiological methods to identify pneumonia pathogens

Article

Last updated: 25 Dec 2024

Subjects

-

Tags

Clinical microbiology

Abstract

Background: Lower respiratory tract infections can be caused by an array of pathogens. Rapid and accurate identification of these organisms is essential for selection of the appropriate antimicrobial regimen. Objectives: Identify microbiology of lower respiratory tract samples by the syndromic multiplex BioFire FilmArray Pneumonia Panel (FAPP) and correlate with the findings by routine microbiological methods. Methods: This study was conducted on 118 non-repetitive respiratory samples, collected through March 2020 to February 2021 for isolation and identification of respiratory pathogens. Results: The FAPP yielded an overall positivity rate of (85/118; 72%). Compared to routine culture; the FAPP were concordantly positive for 37/118 (31.4%) of specimens, and discordant for 39/118 specimens (33%) with 92.5% of positive percentage of agreement. The commonest bacterial pathogens detected by the two methods were Klebsiella pneumoniae, Pseudomonas aeruginosa. Of note, Acinetobacter and other bacterial pathogens were frequently detected by FAPP and not by culture, indicating colonization or contamination (false-positive results). False-negative FAPP results were Candida and bacterial pathogens not included in the FAPP panel, as Morganella. At the semi-quantification level, the concordance rate was 93.9% as out of forty- nine bacterial cultures with significant growth, 46 showed a higher semi-quantification of more than 105 copies of DNA/ml by FAPP and (27/46; 58.7%) showed total agreement with target pathogens isolated by the culture too. Conclusion: BioFire FilmArray Pneumonia Panel (FAPP) was sensitive and detected more potential pneumonia pathogens than culture methods, but it should be interpreted cautiously. Semi- quantification of FAPP helped to understand pathogen significance and correlate with true pathogen.

DOI

10.21608/mid.2022.175277.1415

Keywords

Lower respiratory tract pathogens, pneumonia, Antimicrobial resistance, FilmArray pneumonia panel, Pneumonia pathogens

Authors

First Name

Maha

Last Name

Gad

MiddleName

-

Affiliation

Department of Clinical and Chemical Pathology, Faculty of Medicine, Cairo University, Egypt.

Email

maha.gad@cu.edu.eg

City

Cairo

Orcid

0000-0002-7717-6747

First Name

Amani

Last Name

El Kholy

MiddleName

A

Affiliation

Department of Clinical and Chemical Pathology, Faculty of Medicine, Cairo University, Egypt.

Email

aaakholy@gmail.com

City

-

Orcid

-

First Name

Omnia

Last Name

Taher

MiddleName

M.A.

Affiliation

Department of Clinical and Chemical Pathology, Faculty of Medicine, Ain Shams University.

Email

dr_omniamohamed@yahoo.com

City

Cairo

Orcid

-

Volume

4

Article Issue

2

Related Issue

40831

Issue Date

2023-05-01

Receive Date

2022-11-17

Publish Date

2023-05-01

Page Start

477

Page End

486

Print ISSN

2682-4132

Online ISSN

2682-4140

Link

https://mid.journals.ekb.eg/article_274759.html

Detail API

https://mid.journals.ekb.eg/service?article_code=274759

Order

17

Type

Original Article

Type Code

1,157

Publication Type

Journal

Publication Title

Microbes and Infectious Diseases

Publication Link

https://mid.journals.ekb.eg/

MainTitle

Diagnostic role of FilmArray Pneumonia Panel compared to routine microbiological methods to identify pneumonia pathogens

Details

Type

Article

Created At

25 Dec 2024