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292032

CONVOLUTIONAL NEURAL NETWORK MODELS FOR CANCER TREATMENT RESPONSE PREDICTION

Article

Last updated: 03 Jan 2025

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Abstract

Recently, efforts are exerted on cancer treatment prediction based on the biomarkers related to the tumor. Gene expression and mutation profiles are the most used biomarkers for cancer prediction. Machine learning and deep learning algorithms have been used to predict drug response. The recent research show that the performance of deep learning models is better than the performance of machine learning based one. In this paper, we introduce the use of Convolutional Neural Network (CNN) models to predict different drugs response. DeepInsight algorithm used to convert the input data to images to be more suitable as input to the CNN. We proposed 3 different pretrained CNNs-models (InceptionV3, Xception, EfficientNetB7) with alternatives in their settings in the training process and modification in their architectures to be able to predict the drug response using IC50 regression values. Those models are selected due to their efficiency for ImageNet applications.the proposed modified Xception model achieves the best accuracy over the 2 others. At first, the whole data input passes through DeepInsight which converts the gene expression data and mutation data to images. Dimension reduction is then applied using the helper technique inside the DeepIsignt. Comparative analysis with other Deep models, shows that the proposed approach improve the prediction accuracy in a range between 14% and 22% as a reduction in mean squared error (MSE)

DOI

10.21608/ijicis.2023.180508.1239

Keywords

artificial intelligence, Biomedical, Convolutional neural network, Drug Cancer Prediction

Authors

First Name

Hanan

Last Name

Ahmed

MiddleName

-

Affiliation

Scientific Computing, Faculty of Computer and Information Sciences, Ains Shams University, Cairo, Egypt

Email

hanan.ahmed20100@cis.asu.edu.eg

City

-

Orcid

-

First Name

Howida

Last Name

Shedeed

MiddleName

-

Affiliation

Scientific Computing, Faculty of Computer and Information Sciences, Ains Shams University, Cairo, Egypt

Email

dr_howida@cis.asu.edu.eg

City

-

Orcid

-

First Name

Safwat

Last Name

Hamad

MiddleName

-

Affiliation

Department of Scientific Computing, Faculty of Computers & Information Sciences, Ain Shams University.

Email

shamad@cis.asu.edu.eg

City

-

Orcid

-

First Name

Ashraf

Last Name

Saad

MiddleName

-

Affiliation

Scientific Computing Department, Faculty of Computer and Information Sciences, Ains Shams University, Cairo, Egypt

Email

ashussein@cis.asu.edu.eg

City

-

Orcid

-

Volume

23

Article Issue

1

Related Issue

40411

Issue Date

2023-03-01

Receive Date

2022-12-12

Publish Date

2023-03-01

Page Start

98

Page End

105

Print ISSN

1687-109X

Online ISSN

2535-1710

Link

https://ijicis.journals.ekb.eg/article_292032.html

Detail API

https://ijicis.journals.ekb.eg/service?article_code=292032

Order

292,032

Type

Original Article

Type Code

494

Publication Type

Journal

Publication Title

International Journal of Intelligent Computing and Information Sciences

Publication Link

https://ijicis.journals.ekb.eg/

MainTitle

CONVOLUTIONAL NEURAL NETWORK MODELS FOR CANCER TREATMENT RESPONSE PREDICTION

Details

Type

Article

Created At

23 Dec 2024