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276319

Genotyping of carbapenem resistant Acinetobacter baumannii isolated from Egyptian patients

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Last updated: 23 Jan 2023

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Abstract

Acinetobacter baumannii has recently been known as a major cause of hospital- and community-acquired infections. Carbapenem resistant A. baumanni (CRAB) has been recorded to be resistant to nearly all antibiotics, including the last resort antibiotics; carbapenems. This study aimed to detect the carbapenem resistance levels and mechanisms, in addition to the genotyping of A. baumanni in Upper Egypt. About 200 clinical samples were collected from different wards of Sohag University Hospital, Egypt, from which 20 A. baumannii isolates were recovered and then identified using conventional methods and Polymerase Chain Reaction (PCR). Antibiotic sensitivity testing was carried out using the Disk diffusion method, followed by PCR testing of the common carbapenemase-encoding genes, including OXA-51, OXA-58, KPC, GES, IMP, NDM, VIM, SIM, and GIM. Genotyping was performed using the Enterobacterial Repetitive Intergenic Consensus-Polymerase chain reaction (ERIC-PCR). About 85 % of A. baumannii strains were multidrug resistant (MDR), and high rate of Extreme drug resistant (XDR) A. baumannii (70 %) was detected. Carbapenem resistance was detected in 65 % of A. baumannii isolates, 70.58 % of MDR isolates, and 85.7 % of XDR isolates, respectively. Carbapenemase- encoding genes, including blaOXA-51, VIM, NDM, and GES, were detected in 100 %, 100 %, 76.9 2 % and 76.92 % of the carbapenem resistant A. baumannii (CRAB) isolates, respectively. The blaIMP and blaKPC genes had lower prevalence rates of 15.38 % and 30.77 %; respectively, whereas the SIM, GIM, and OXA-58 genes were not detected in any of the tested A. baumanni isolates. All of the MDR isolates carried three or more the carbapenemases encoding genes, and 85.7 % of the XDR isolates carried four or more of the carbapenemase-encoding genes. The dendrogram constructed from the ERIC-PCR results showed that the A. baumannii isolates were divided into three different clusters.

DOI

10.21608/nrmj.2022.276319

Keywords

Acinetobacter baumannii, MDR, Crab, ERIC-PCR, carbapenemases

Authors

First Name

Heba

Last Name

Ahmed Mohamed

MiddleName

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Affiliation

Department of Microbiology and Immunology, Faculty of Pharmacy, Minia University, Minia, Egypt

Email

heba.ahmed@mu.edu.eg

City

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Orcid

0000-0002-8454-0738

First Name

Gamal

Last Name

Fadl Mahmoud Gad

MiddleName

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Affiliation

Department of Microbiology and Immunology, Faculty of Pharmacy, Minia University, Minia, Egypt

Email

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City

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Orcid

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First Name

Mona

Last Name

Fattouh Mohamed

MiddleName

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Affiliation

Department of Medical Microbiology and Immunology, Faculty of Medicine, Sohag University, Sohag, Egypt

Email

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City

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Orcid

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First Name

Hend

Last Name

Harby Ahmed

MiddleName

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Affiliation

Department of Microbiology, Faculty of Pharmacy, Sohag University, Egypt

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City

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Orcid

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First Name

Ameer

Last Name

Effat Elfarash

MiddleName

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Affiliation

Department of Genetics, Faculty of Agriculture, Assiut University, Assiut, Egypt

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Orcid

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First Name

Nahed

Last Name

Fathallah Fahmy

MiddleName

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Affiliation

Department of Medical Microbiology and Immunology, Faculty of Medicine, Sohag University, Sohag, Egypt

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Volume

6

Article Issue

6

Related Issue

37990

Issue Date

2022-12-01

Receive Date

2022-11-21

Publish Date

2022-12-01

Page Start

1,801

Page End

1,820

Print ISSN

2537-0286

Online ISSN

2537-0294

Link

https://nrmj.journals.ekb.eg/article_276319.html

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https://nrmj.journals.ekb.eg/service?article_code=276319

Order

276,319

Type

Original Article

Type Code

2,265

Publication Type

Journal

Publication Title

Novel Research in Microbiology Journal

Publication Link

https://nrmj.journals.ekb.eg/

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Article

Created At

23 Jan 2023