240524

A New Algorithm For Ssr Detection (Ssrs Finder)

Article

Last updated: 04 Jan 2025

Subjects

-

Tags

Biomedical Engineering & Bioinformatics

Abstract

One of the main challenges with bioinformatics software is that the size and complexity of datasets necessitate trading speed for accuracy, or completeness. To combat this problem of computational complexity, a plethora of heuristic algorithms have arisen that report a ‘good enough' solution to biological questions. However, in instances such as Simple Sequence Repeats (SSRs), a ‘good enough' solution may not accurately portray results in population genetics, phylogenetics and forensics, which require accurate SSRs to calculate intra- and inter-species interactions. And so, Biotechnologists took a lot of time to identify similar sequences on a DNA. In addition, the accuracy of the results was an important problem. In order to overcome this problem, biotechnologists need a modern hardware and equipment for the program to function efficiently. We proposed the SSRs finder application that detects the existing SSRs by determining the start and the stop, the min and the max and prepares a comparison between the old SSRs with the new SSRs then records the results and shows them in the quarry with high accuracy and speed.

DOI

10.21608/asc.2021.240524

Keywords

DNA, microsatellites, NCBI, SSRs

Authors

First Name

Khalid

Last Name

El Menshawy

MiddleName

-

Affiliation

Management Information System, Higher Institute of Computer and Information Technology, Cairo, Egypt

Email

dr.khalid.minshawi@sha.edu.eg

City

-

Orcid

-

First Name

Nada

Last Name

Hossam Sharkawy

MiddleName

-

Affiliation

Management Information System, Higher Institute of Computer and Information Technology, Cairo, Egypt

Email

n.hossam@sha.edu.eg

City

-

Orcid

-

Volume

12

Article Issue

1

Related Issue

34510

Issue Date

2021-06-01

Receive Date

2022-05-31

Publish Date

2021-06-01

Page Start

64

Page End

74

Print ISSN

1687-8515

Online ISSN

2682-3578

Link

https://asc.journals.ekb.eg/article_240524.html

Detail API

https://asc.journals.ekb.eg/service?article_code=240524

Order

5

Type

Original Article

Type Code

1,549

Publication Type

Journal

Publication Title

Journal of the ACS Advances in Computer Science

Publication Link

https://asc.journals.ekb.eg/

MainTitle

A New Algorithm For Ssr Detection (Ssrs Finder)

Details

Type

Article

Created At

23 Jan 2023