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174735

The Intercontinental ‘Omics’ mining of Antibiotic Resistant Genes in <i>Mycobacterium tuberculosis</i>

Article

Last updated: 04 Jan 2025

Subjects

-

Tags

Microbial genetics and Proteomics

Abstract

Background: By the year 2030, it will be seven more times difficult and seven times more of 14,600 pills to treat one person with drug resistant tuberculosis (TB) if we fail in the use of ‘Omics therapy'. A curated database of the National Centre for Biotechnology Institute (NCBI): Comprehensive Antibiotic Resistance Database (CARD) provides high-through-put referenced information on antibiotics resistance.Methods:This study employed a less expensive but high accuracy software-based approach; Comprehensive Antibiotics Resistance Database to identify the resistance genes within the genomes of Mycobacterium tuberculosis across the five continents. Thirty complete genomes of Mycobacterium tuberculosis were retrieved and their respective accession numbers and locations were categorized into Perfect and Strict genes. Results: The least number of Mycobacterium tuberculosis complete genome sequences were retrieved from the America followed by Antarctica and Africa with 10%, 10%, 25% prevalence respectively. The continents with the highest number of sequences were Asia and Europe which account for 25% and 33.3% respectively. The prevalence of genes categorized under the strict category from CARD database with mdsB, mdsA, AAC(6')-Iaa, sdiA, golS TEM-1, tetW , ANT(4')-Ib, had 100% prevalence each (present in all the 30 complete genome sequences retrieved), arlR, arlS, mepR, mgrA had the prevalence rates of 25%, each, mepA, Lmrs, FosB had the prevalence rates of 33.3% each.

DOI

10.21608/mid.2021.73675.1145

Keywords

Omics, CARD, Mycobacterium tuberculosis, Multi-Drugs Resistant, Whole Genome Sequence

Authors

First Name

Taiwo

Last Name

Aderibigbe

MiddleName

-

Affiliation

Department of Science Laboratory Technology, Microbiology Unit, The Oke Ogun Polytechnic, Saki Oyo State Nigeria

Email

sarahfunmi@gmail.com

City

-

Orcid

-

First Name

Adeoti

Last Name

Micheal

MiddleName

-

Affiliation

Science Laboratory Technology, Faculty of Science, Biological Sciences Unit, The Oke Ogun Polytechnic, Saki. Department of Zoology, Cellular Parasitology Programme, University of Ibadan, Nigeria

Email

txy23m@yahoo.com

City

Ibadan

Orcid

-

Volume

3

Article Issue

2

Related Issue

32908

Issue Date

2022-05-01

Receive Date

2021-04-23

Publish Date

2022-05-01

Page Start

428

Page End

433

Print ISSN

2682-4132

Online ISSN

2682-4140

Link

https://mid.journals.ekb.eg/article_174735.html

Detail API

https://mid.journals.ekb.eg/service?article_code=174735

Order

22

Type

Original Article

Type Code

1,157

Publication Type

Journal

Publication Title

Microbes and Infectious Diseases

Publication Link

https://mid.journals.ekb.eg/

MainTitle

The Intercontinental ‘Omics’ mining of Antibiotic Resistant Genes in <i>Mycobacterium tuberculosis</i>

Details

Type

Article

Created At

22 Jan 2023