Beta
ManageSearchChatDiscover
77008

Spectral Features Based on Bidirectional Long Short-Term Memory for DNA Classification

Article

Last updated: 25 Dec 2024

OverviewSimilar Items

Subjects

-

Tags

-

Abstract

the analyzing hidden features of DNA sequence is main challenge in bioinformatics. Since learning from DNA sequences based on analytical approaches to identify the hidden patterns provides a vital role in various genomic applications. In classification tasks, Re-current neural network with Bidirectional Long Short-Term Memory (BLSTM) is usually used for sequential data that is strongly dependent on the feature's extraction stage. Recently, digital signal processing (DSP) techniques such as spectral transformations has been used in genomic data for extracting the hidden features and periodicities within the DNA fragments. The objective of this paper is comparing different spectral transformations of DNA sequences such as Discrete Cosine Transform (DCT), Discrete Fourier Transform (DFT) and Discrete Wavelet Transform (DWT) based on BLSTM to achieve high performance in the taxonomic classification of bacteria. The reason for applying these transformations emerges from its wide and effective use for extracting features, decorrelation, ordering and dimensionality reduction purposes in the fields of speech and image processing. Evaluation metrics such as F1 score and accuracy show that DWT features give surpassing performance compared with other features. 

DOI

10.21608/mjeer.2019.77008

Keywords

Bidirectional Long Short-Term Memory (BLSTM), Discrete Cosine Transform (DCT), Discrete Fourier Transform (DFT) and Discrete Wavelet Transform (DWT)

Authors

First Name

Samia M.

Last Name

Abd-Alhalem

MiddleName

-

Affiliation

dept. Electronics and Electrical Communications Engineering Faculty of Electronic Engineering Menoufia University: Menouf, Egypt

Email

-

City

-

Orcid

-

First Name

Naglaa F.

Last Name

Soliman

MiddleName

-

Affiliation

dept. of Electronics and Communication Faculty of Engineering, Zagazig University, Zagazig, Egypt Faculty of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia

Email

-

City

-

Orcid

-

First Name

Salah Eldin, S. E.

Last Name

Abd Elrahman

MiddleName

-

Affiliation

dept. Computer Science and Engineering, Faculty of Electronic Engineering, Menoufia University Menouf, Egypt

Email

-

City

-

Orcid

-

First Name

Nabil A.

Last Name

Ismail

MiddleName

-

Affiliation

dept. of Computer Science and Engineering, Faculty of Electronic Engineering, Menoufia University Menouf, Egypt

Email

-

City

-

Orcid

-

First Name

El-Sayed M.

Last Name

El-Rabaie

MiddleName

-

Affiliation

dept. Electronics and Electrical Communications Engineering Faculty of Electronic Engineering Menoufia University: Menouf, Egypt

Email

-

City

-

Orcid

-

First Name

Fathi E.

Last Name

Abd El-Samie

MiddleName

-

Affiliation

dept. Electronics and Electrical Communications Engineering Faculty of Electronic Engineering Menoufia University: Menouf, Egypt

Email

-

City

-

Orcid

-

Volume

28

Article Issue

ICEEM2019-Special Issue

Related Issue

9704

Issue Date

2019-12-01

Receive Date

2020-03-11

Publish Date

2019-12-01

Page Start

183

Page End

188

Print ISSN

1687-1189

Online ISSN

2682-3535

Link

https://mjeer.journals.ekb.eg/article_77008.html

Detail API

https://mjeer.journals.ekb.eg/service?article_code=77008

Order

55

Type

Original Article

Type Code

1,088

Publication Type

Journal

Publication Title

Menoufia Journal of Electronic Engineering Research

Publication Link

https://mjeer.journals.ekb.eg/

MainTitle

Spectral Features Based on Bidirectional Long Short-Term Memory for DNA Classification

Details

Type

Article

Created At

22 Jan 2023