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90641

Cancer Classification using Data Mining Applications

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Last updated: 22 Jan 2023

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Abstract

The correct interpretation of the biological data is the main goal of Bioinformatics. One emerging and reliable source of data is the microarray technology which is considered a breakthrough in Bioinformatics. Cancer classification using microarray data is a challenge due to the enormous number of features compared to the samples. In the current work, an algorithm was developed in order to classify cancer samples. The developed algorithm was conducted on two steps. In the first step, the feature selection technique was applied on the data to eliminate any undesired features of little or no predictive information. The feature selection technique was based on Entropy and F-score measurements. Then, the classification process was performed using linear support vector machine (SVM), K-Nearest Neighbor (KNN) and Naive Bayes (NB) algorithms, the results achieved were 100% using Naive Bayes, 97% using Linear SVM and 94% using KNN on leukemia dataset .The ability of the developed algorithm for classifying the samples was practically examined using leukemia microarray dataset. The results showed that the developed algorithm could detect and classify all the samples. Then we generalized the algorithm to be applied on different microarray datasets such as Prostate and Colon.

DOI

10.21608/iugrc.2017.90641

Authors

First Name

Ahmed

Last Name

Youssef

MiddleName

Ramadan

Affiliation

Fayoum University, Egypt.

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First Name

Ahmed

Last Name

Ragab

MiddleName

Adel

Affiliation

Fayoum University, Egypt.

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First Name

Aya

Last Name

Sadek

MiddleName

Mohamed

Affiliation

Fayoum University, Egypt.

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First Name

Shima

Last Name

Korany

MiddleName

Moustafa

Affiliation

Fayoum University, Egypt.

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Orcid

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First Name

Abdelrahman

Last Name

Youssef

MiddleName

Gamal

Affiliation

Fayoum University, Egypt.

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First Name

Abdelrahman

Last Name

Ibrahim

MiddleName

-

Affiliation

Fayoum University, Egypt.

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First Name

Rania

Last Name

Abul Seoud

MiddleName

Ahmed Abdel Azeem

Affiliation

Department of Electrical Engineering, Communication and Electronics Section; Faculty of Engineering, Fayoum University; Fayoum, Egypt.

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Orcid

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First Name

Dina

Last Name

Salem

MiddleName

Ahmed

Affiliation

Dept. of Computer Eng.-Faculty of Eng. Misr University for Science and Technology, 6th of October, Giza, Egypt.

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Volume

2

Article Issue

Second International Undergraduate Research Conference, IUGRC

Related Issue

13627

Issue Date

2017-07-01

Receive Date

2020-05-19

Publish Date

2017-07-01

Page Start

129

Page End

129

Link

https://iugrc.journals.ekb.eg/article_90641.html

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https://iugrc.journals.ekb.eg/service?article_code=90641

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Original Article

Type Code

762

Publication Type

Journal

Publication Title

The International Undergraduate Research Conference

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https://iugrc.journals.ekb.eg/

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Article

Created At

22 Jan 2023