260028

Restriction Enzyme Maps of Circular Sequences of BBTV-DNA Components and Bioinformatics of Their Amino Acids

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Last updated: 03 Jan 2025

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Abstract

In this study, NEBcutter is used in generating the restriction enzymes map of the circular sequence of BBTV-DNA components (DNA-R, DNA-U3, DNA-S, DNA-M, DNA-M and DNA-N) appearing with each cleavage code and enzyme name code. Results showed that the closest enzymes at the 5' end of the restriction sites of HphI, ApoI,BtsIMutI, Fnu4HI, Hpy99Iand BccIwere detected for the six BBTV-DNA components, receptively. While, the restriction sites of Cac8I, AluI, Hpy166II, DpnII, AccI and AseI were detected as the closest enzymes at 3' end for the same components, respectively. These BBTV-DNA components were encoding the genes of replication-associated protein (BBJ34149.1, 278 aa), U3 protein (BBJ34150.1, 88 aa), capsid protein (BBJ34151.1, 175 aa), movement protein (BBJ34152.1, 102 aa), cell-cycle link protein (BBJ34153.1, 156 aa) and nuclear shuttle protein (BBJ34154.1, 129 aa), respectively. Similarity ranged from 95 to 100% found when sequences producing significant alignments were done between the ORFs of BBTV-DNA components and the most similar BBTV overseas strains. The number and type of domains of the ORFs of the six BBTV components and their families were determined. Two domains were found for DNA-R (viral rep and RNA_helicase domains). NA-U3 has a hypothetical protein belonging to un-characterized protein U3 domain, one domain called nanovirus_coat the protein family membership is Nanovirus coat protein recorded for DNA-S, DNA-Mhas one domain Babovirus_MP, DNA-C has a domain belonging to cell cycle protein and DNA-N has a domain belonging to nuclear shuttle protein domain.

DOI

10.21608/eajbsg.2022.260028

Keywords

BBTV, Restriction enzymes map, domains, Nanovirus, Babovirus

Authors

First Name

Abdel-Razek

Last Name

S.

MiddleName

Fatma

Affiliation

Department of Agricultural Microbiology (Virology Laboratory), Faculty of Agriculture, Ain Shams University, P.O. Box 68, Hadayek Shobra, 11241, Cairo, Egypt

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Orcid

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First Name

Ibrahim

Last Name

D.

MiddleName

S.

Affiliation

Agricultural Genetic Engineering Research Institute (AGERI), Agricultural Research Center (ARC), 9 Gamaa St., P.O. Box12619, Giza, Egypt

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Orcid

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First Name

El-Masry

Last Name

S.

MiddleName

Samar

Affiliation

Department of Agricultural Microbiology (Virology Laboratory), Faculty of Agriculture, Ain Shams University, P.O. Box 68, Hadayek Shobra, 11241, Cairo, Egypt

Email

samar_sayed@agr.asu.edu.eg

City

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Orcid

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First Name

Faiesal

Last Name

A.

MiddleName

Abeer

Affiliation

Department of Basic and Applied Agricultural Sciences, Higher Institute for Agriculture Co-Operation, Shoubra EL-Kheima, Egypt

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Orcid

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First Name

Sadik

Last Name

S.

MiddleName

A.

Affiliation

Department of Agricultural Microbiology (Virology Laboratory), Faculty of Agriculture, Ain Shams University, P.O. Box 68, Hadayek Shobra, 11241, Cairo, Egypt

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Volume

14

Article Issue

2

Related Issue

35532

Issue Date

2022-12-01

Receive Date

2022-07-20

Publish Date

2022-09-26

Page Start

99

Page End

112

Print ISSN

2090-0872

Online ISSN

2090-0880

Link

https://eajbsg.journals.ekb.eg/article_260028.html

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https://eajbsg.journals.ekb.eg/service?article_code=260028

Order

8

Type

Original Article

Type Code

689

Publication Type

Journal

Publication Title

Egyptian Academic Journal of Biological Sciences, G. Microbiology

Publication Link

https://eajbsg.journals.ekb.eg/

MainTitle

Restriction Enzyme Maps of Circular Sequences of BBTV-DNA Components and Bioinformatics of Their Amino Acids

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Article

Created At

22 Jan 2023