Beta
197269

A “pocket-friendly” Dimethyl Sulphoxide (DMSO) technique for mushroom genomic DNA extraction suitable for DNA-based identifications

Article

Last updated: 23 Dec 2024

Subjects

-

Tags

Agricultural Microbiology
Ecosystem ecology
Fungi
Microbial Ecology
Symbiosis

Abstract

DNA extraction from macrofungi is a prerequisite for all the downstream biotechnology-derived applications such as Sanger and genome sequencing, microarrays. However, extraction of high-quality DNA from macro-fungal tissues is often painstaking, challenging, and may pose a delay for high-throughput experiments, such as DNA sequence identification based biodiversity, invasion or impact assessment surveys. Commercial DNA extraction kits often prove to be either expensive or inconsistent in DNA extraction from diverse macro-fungal species samples, such as mushroom genera, where fruiting bodies vary greatly in texture, size, chemical composition and pigmentation. The present study implemented Dimethyl Sulphoxide (DMSO) to lyse cell walls of dried, grounded fungal samples for DNA extraction. The technique is efficient, rapid, and affordable and requires a low amount from the sample for DNA extraction. Furthermore, both the quantitative and qualitative data demonstrate superior grade DNA that yield products in subsequent PCR amplification of the ITS-5.8S phylogenetic marker region. This technique will allow researchers from underdeveloped and developing countries with varying levels of expertise to extract mushroom DNA even with a low research budget.  It will also enable biodiversity, conservation, impact assessment, and invasion biology surveys in these countries, as well as fungorium based research.

DOI

10.21608/mb.2021.96331.1041

Keywords

DMSO, high throughput DNA extraction, ITS-5.8S rRNA PCR, low budget, mushroom

Authors

First Name

Soumya

Last Name

Ghosh

MiddleName

-

Affiliation

Department of Genetics, Natural and Agricultural Sciences, University of Free State, 205 Nelson Mandela Dr, Park West, Bloemfontein, 9301, South Africa

Email

soumyaghosh@yahoo.com

City

Bloemfontein

Orcid

0000-0002-4945-3516

First Name

Magagula

Last Name

Nomasonto

MiddleName

-

Affiliation

Department of Genetics, Natural and Agricultural Sciences, University of Free State, 205 Nelson Mandela Dr, Park West, Bloemfontein, 9301, South Africa

Email

magagulanv@ufs.ac.za

City

-

Orcid

-

First Name

Thabo

Last Name

Mkhize

MiddleName

Humphrey

Affiliation

Department of Genetics, Natural and Agricultural Sciences, University of Free State, 205 Nelson Mandela Dr, Park West, Bloemfontein, 9301, South Africa

Email

mkizethabo007@gmail.com

City

-

Orcid

-

First Name

Marieka

Last Name

Gryzenhout

MiddleName

-

Affiliation

Department of Genetics, Natural and Agricultural Sciences, University of Free State, 205 Nelson Mandela Dr, Park West, Bloemfontein, 9301, South Africa

Email

gryzenhoutm@ufs.ac.za

City

-

Orcid

-

Volume

6

Article Issue

1

Related Issue

24927

Issue Date

2021-06-01

Receive Date

2021-09-15

Publish Date

2021-10-01

Page Start

66

Page End

74

Print ISSN

2357-0326

Online ISSN

2357-0334

Link

https://mb.journals.ekb.eg/article_197269.html

Detail API

https://mb.journals.ekb.eg/service?article_code=197269

Order

8

Type

Original Article

Type Code

502

Publication Type

Journal

Publication Title

Microbial Biosystems

Publication Link

https://mb.journals.ekb.eg/

MainTitle

A “pocket-friendly” Dimethyl Sulphoxide (DMSO) technique for mushroom genomic DNA extraction suitable for DNA-based identifications

Details

Type

Article

Created At

22 Jan 2023