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396492

Estimate MFE of secondary structure and thermodynamic Ensemble prediction of hsa-mir-181a ACE2 in un/vaccinated samples compared with the wild type

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Last updated: 04 Jan 2025

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Abstract

Using intelligent computer programs, the secondary structure and thermodynamic properties of hsa-mir-181a ACE2 were investigated in both vaccinated and unvaccinated samples, comparing them to the wild type. By utilizing the RNAalifold web server, a consensus structure of aligned micro-RNA sequences was predicted, along with the minimum free energy (MFE) and equilibrium base-pairing probabilities. The results showed a strong correlation between the secondary structure of hsa-mir-181a ACE2 and the vaccination status, with a higher MFE observed in the vaccinated group. This study proved a significant relationship between the secondary structure of hsa-mir-181a ACE2 and the selected class of vaccinated or unvaccinated. The value of (MFE) of the secondary structure of microRNA increased in vaccinated compared with unvaccinated, with a significant difference evident. Also, at the thermodynamic free energy (value) level, the vaccination was increased compared to the unvaccinated as the difference was clear and the relationship was achieved.

DOI

10.21608/jbaar.2024.396492

Keywords

microRNA, Computational microRNA, Minimum free energy, Thermodynamic free energy, The RNAalifold web server

Authors

First Name

Mohammed

Last Name

Alquraishi

MiddleName

K. S.

Affiliation

Department of Pathological Analyses, Faculty of Science, University of Kufa, Iraq

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Orcid

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First Name

Maha

Last Name

Al-Bayati

MiddleName

Mashrq

Affiliation

Department of Medical Laboratory Technology, Faculty of Medical Technology, University of Imam Jaafar Sadiq, Najaf, Iraq

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City

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Orcid

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First Name

Mustafa

Last Name

AlFatlawi

MiddleName

Hamza

Affiliation

Department of Pathological Analyses, Faculty of Science, University of Kufa, Iraq

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City

-

Orcid

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First Name

Noor

Last Name

Alamer

MiddleName

-

Affiliation

Department of Pathological Analyses, Faculty of Science, University of Kufa, Iraq

Email

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City

-

Orcid

-

First Name

Mohammad

Last Name

Alzeyadi

MiddleName

-

Affiliation

Department of Biology, Faculty of Science, University of Kufa, Iraq

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Orcid

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Volume

10

Article Issue

5

Related Issue

51933

Issue Date

2024-12-01

Receive Date

2024-01-12

Publish Date

2024-12-01

Page Start

169

Page End

179

Print ISSN

2356-9174

Online ISSN

2356-9182

Link

https://jbaar.journals.ekb.eg/article_396492.html

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https://jbaar.journals.ekb.eg/service?article_code=396492

Order

396,492

Type

Original Article

Type Code

1,272

Publication Type

Journal

Publication Title

Journal of Bioscience and Applied Research

Publication Link

https://jbaar.journals.ekb.eg/

MainTitle

Estimate MFE of secondary structure and thermodynamic Ensemble prediction of hsa-mir-181a ACE2 in un/vaccinated samples compared with the wild type

Details

Type

Article

Created At

25 Dec 2024